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Sample no. Isolate name Year Genotype Accession number E gene NS1 gene 1 1/D3/Del/2013 2013 Ⅲ KT250573 KT250581 2 2/D3/Del/2013 2013 Ⅲ KT250574 KT250582 3 3/D3/Del/2013 2013 Ⅲ KT250575 KT250583 4 4/D3/Del/2013 2013 Ⅲ KT250576 KT250584 5 5/D3/Del/2013 2013 Ⅲ KT250577 KT250585 6 6/D3/Del/2013 2013 Ⅲ KT250578 KT250586 7 7/D3/Del/2013 2013 Ⅲ KT250579 KT250587 8 8/D3/Del/2013 2013 Ⅲ KT250580 KT250588 9 1/D3/Del/2014 2014 Ⅲ KT250589 KT250593 10 2/D3/Del/2014 2014 Ⅲ KT250590 KT250594 11 3/D3/Del/2014 2014 Ⅲ KT250591 KT250595 12 4/D3/Del/2014 2014 Ⅲ KT250592 KT250596 Table 1. Details of DENV-3 isolates from India sequenced in the study.
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Sample
no.Isolate name Country & Region Year Genotype Accession
no.1. Sleman/78 Indonesia 1978 Ⅰ AY648961 2. InJ-16-82 Indonesia 1982 Ⅰ DQ401690 3. den3_88 Indonesia 1988 Ⅰ AY858038 4. PF89/27643 French Polynesia 1989 Ⅰ AY744677 5. PF90/3056 French Polynesia 1990 Ⅰ AY744680 6. PF94/136116 French Polynesia 1994 Ⅰ AY744685 7. PhMH-J1-97 Philippines 1997 Ⅰ AY496879 8. 98902890 DF DV-3 Indonesia 1998 Ⅰ AB189128 9. KJ30i Indonesia 2004 Ⅰ AY858042 10. D3/Hu/TL129NIID/2005 East Timor 2005 Ⅰ AB214882 11. DENV-3/TH/BID-V3360/1973 Thailand 1973 Ⅱ GQ868593 12. ThD3_0010_87 Thailand 1987 Ⅱ AY676352 13. C0360/94 Thailand 1994 Ⅱ AY923865 14. Singapore 8120/95 Singapore 1995 Ⅱ AY766104 15. 98TW358 China's Taiwan 1998 Ⅱ DQ675522 16. DENV-3/TH/BID-V2329/2001 Thailand 2001 Ⅱ FJ744740 17. DENV-3/IPC/BID-V3809/2003 Cambodia 2003 Ⅱ GU131906 18. DENV-3/KH/BID-V2087/2005 Cambodia 2005 Ⅱ GQ868629 19. DENV-3/VN/BID-V1014/2006 Vietnam 2006 Ⅱ EU482458 20. DENV-3/KH/BID-V3829/2007 Cambodia 2007 Ⅱ HM181935 21. DENV-3/IPC/BID-V3808/2008 Cambodia 2008 Ⅱ GU131905 22. DENV-3/LK/BID-V2410/1983 Sri Lanka 1983 Ⅲ GQ199889 23. DENV-3/MZ/BID-V2418/1985 Mozambique 1985 Ⅲ FJ882575 24. DENV-3/LK/BID-V2414/1985 Sri Lanka 1985 Ⅲ FJ882574 25. DENV-3/LK/BID-V2412/1989 Sri Lanka 1989 Ⅲ FJ882572 26. DENV-3/LK/BID-V2411/1989 Sri Lanka 1989 Ⅲ FJ882571 27. DENV-3/LK/BID-V2413/1993 Sri Lanka 1993 Ⅲ FJ882573 28. BR DEN3 97-04 Brazil 1997 Ⅲ EF629367 29. DENV-3/LK/BID-V2409/1997 Sri Lanka 1997 Ⅲ GQ252674 30. DENV-3/US/BID-V1449/1998 Puerto Rico 1998 Ⅲ EU726772 31. 99TW628 China's Taiwan 1999 Ⅲ DQ675533 32. DENV-3/US/BID-V1452/1999 Puerto Rico 1999 Ⅲ EU781137 33. D3/H/IMTSSA-MART/1999/1243 Martinique 1999 Ⅲ AY099337 34. DENV-3/VE/BID-V2175/2000 Venezuela 2000 Ⅲ FJ639747 35. DENV-3/US/BID-V2103/2000 Puerto Rico 2000 Ⅲ FJ547071 36. D3/H/IMTSSA-SRI/2000/1266 Sri Lanka 2000 Ⅲ AY099336 37. DENV-3/LC/BID-V3929/2001 Saint Lucia 2001 Ⅲ GQ868616 38. DENV-3/VE/BID-V911/2001 Venezuela 2001 Ⅲ EU529691 39. DENV-3/VE/BID-V913/2001 Venezuela 2001 Ⅲ EU482614 40. DENV-3/CO/BID-V3393/2002 Colombia 2002 Ⅲ GQ868571 41. BR74886/02 Brazil 2002 Ⅲ AY679147 42. DENV-3/CO/BID-V3398/2003 Colombia 2003 Ⅲ GQ868574 43. D3BR/RP1/2003 Brazil 2003 Ⅲ EF643017 44. DENV-3/US/BID-V1089/2003 Puerto Rico 2003 Ⅲ EU529702 45. GWL-25 India 2003 Ⅲ AY770511 46. DENV-3/VE/BID-V1590/2004 Venezuela 2004 Ⅲ FJ373304 47. DENV-3/US/BID-V1606/2004 Puerto Rico 2004 Ⅲ FJ024465 48. DENV-3/CO/BID-V3400/2004 Colombia 2004 Ⅲ GQ868575 49. D3/SG/SS710/2004 Singapore 2004 Ⅲ EU081181 50. D3/SG/05K2933DK1/2005 Singapore 2005 Ⅲ EU081198 51. DENV-3/US/BID-V1621/2005 Puerto Rico 2005 Ⅲ FJ182011 52. DENV-3/VE/BID-V1593/2005 Venezuela 2005 Ⅲ EU854292 53. NAa Singapore 2005 Ⅲ AY662691 54. D3/SG/05K2918DK1/2005 Singapore 2005 Ⅲ EU081197 55. D3/SG/05K3316DK1/2005 Singapore 2005 Ⅲ EU081202 56. DENV-3/IND/59826/2005 India 2005 Ⅲ JQ922557 57. DENV-3/IND/58760/2005 India 2005 Ⅲ JQ922556 58. NIV_058760 India 2005 Ⅲ JQ686078 59. NIV_059826 India 2005 Ⅲ JQ686077 60. DENV-3/CO/BID-V3404/2006 Colombia 2006 Ⅲ GU131954 61. DENV-3/US/BID-V1080/2006 Puerto Rico 2006 Ⅲ EU529699 62. D3/Pakistan/43298/2006 Pakistan 2006 Ⅲ KF041259 63. D3/Pakistan/55709/2006 Pakistan 2006 Ⅲ KF041256 64. DENV-3/CO/BID-V3405/2007 Colombia 2007 Ⅲ GQ868578 65. DENV-3/BR/BID-V3615/2007 Brazil 2007 Ⅲ GU131878 66. DENV-3/VE/BID-V2483/2007 Venezuela 2007 Ⅲ GQ868587 67. ND-143 India 2007 Ⅲ FJ644564 68. RR-72 India 2008 Ⅲ GQ466079 69. DENV-3/NI/BID-V4743/2009 Nicaragua 2009 Ⅲ HQ166034 70. GZ1D3 China 2009 Ⅲ GU363549 71. D3/Pakistan/45251/2009 Pakistan 2009 Ⅲ KF041258 72. NIV_0948359 India 2009 Ⅲ JQ686081 73. NIV_1029582 India 2010 Ⅲ JQ686080 74. NIV_1030355 India 2010 Ⅲ JQ686076 75. D3/India/1008aTw India 2010 Ⅲ JF968097 76. 13GDZDVS30B China 2013 Ⅲ KF954946 77. 13GDZDVS30C China 2013 Ⅲ KF954947 78. 13GDZDVS30D China 2013 Ⅲ KF954948 79. 13GDZDVS30E China 2013 Ⅲ KF954949 80. 13GDZDVS30A China 2013 Ⅲ KF954945 81. Puerto Rico 1963 Puerto Rico 1963 Ⅳ L11433 82. Puerto Rico 1977 Puerto Rico 1977 Ⅳ L11434 83. H87 Philippines 1956 Ⅴ M93130 84. 80-2 China 1980 Ⅴ AF317645 85. BR DEN3 RO1-02 Brazil 2002 Ⅴ EF629370 aNA, name of the isolate is not available in GenBank Table S1. DENV-3 isolates of diverse geographic origin, used in the study.
Figure 2 个
Table 2 个